Export the results

Export the results generated by the reconstruction

export(
  x,
  dataname = x$misc$site_info$site_name,
  climate = x$parameters$climate,
  loc = getwd(),
  as.csv = FALSE,
  fullUncertainties = FALSE,
  loo = FALSE,
  weights = FALSE,
  pdfs = FALSE
)

Arguments

x

The name, age or depth of the rows of df (the samples).

dataname

The name of the site (default: x$misc$site_info$site_name)

climate

The climate data to export. Data for all climate variables are saved by default.

loc

The path where to export the data (default: working directory)

as.csv

Boolean to indicate if the data should be exported as csv (TRUE) or xlsx (FALSE, default)

fullUncertainties

A boolean to export the full climate uncertainty distribution (default FALSE)

loo

A boolean to export the leave-one-out data if they exist (default FALSE)

weights

A boolean to export the weights derived from the percentages (default FALSE)

pdfs

A boolean to export the taxa's pdfs (default FALSE)

Value

No return value, function called to export the results.

Examples

if (FALSE) {
  data(crest_ex)
  data(crest_ex_pse)
  data(crest_ex_selection)
  reconstr <- crest(
    df = crest_ex, pse = crest_ex_pse, taxaType = 0,
    site_info = c(7.5, 7.5),
    climate = c("bio1", "bio12"), bin_width = c(2, 20),
    shape = c("normal", "lognormal"),
    selectedTaxa = crest_ex_selection, dbname = "crest_example",
    leave_one_out = TRUE
  )
  #> Replace 'tempdir()' by the location where the sample should be saved (e.g. 'getwd()')
  export(reconstr, dataname='crest_example',
         fullUncertainties=TRUE, weights=TRUE, loo=TRUE, pdfs=TRUE,
         loc=tempdir())
}