Calculate the climate tolerance of the taxa from their pdfs.
pdf_ranges(
x,
climate = x$parameters$climate,
taxanames = x$input$taxa.name,
uncertainties = x$parameters$uncertainties,
orderby = NA
)A crestObj generated by either the crest.calibrate,
crest.reconstruct or crest functions.
Climate variables to be used to generate the plot. By default all the variables are included.
A list of taxa to use for the plot (default is all the recorded taxa).
A (vector of) threshold value(s) indicating the error bars that should be calculated (default are the values stored in x).
A string ('name', or one of the climate variables) to sort the output table
The set of coordinates ext projected in equal earth.
data(reconstr)
pdf_ranges(reconstr, climate='bio1')
#> $`Range = 50%`
#> bio1_tol_inf bio1_tol_sup bio1_range
#> Taxon1 23.00601 25.33066 2.324649
#> Taxon2 23.64729 25.81162 2.164329
#> Taxon3 14.42886 16.99399 2.565130
#> Taxon4 18.35671 22.20441 3.847695
#> Taxon5 18.11623 22.52505 4.408818
#> Taxon6 18.11623 22.36473 4.248497
#>
#> $`Range = 95%`
#> bio1_tol_inf bio1_tol_sup bio1_range
#> Taxon1 20.68136 27.73547 7.054108
#> Taxon2 21.56313 27.97595 6.412826
#> Taxon3 11.86373 19.55912 7.695391
#> Taxon4 14.50902 25.97194 11.462926
#> Taxon5 13.86774 26.85371 12.985972
#> Taxon6 13.86774 26.53307 12.665331
#>
pdf_ranges(reconstr, climate='bio12', orderby='bio1', uncertainties=c(0.2, 0.6, 0.95))
#> Warning: The value orderby = 'bio1' is not accepted. It should be 'name' or one of the climate variables. The data were not sorted.
#> $`Range = 20%`
#> bio12_tol_inf bio12_tol_sup bio12_range
#> Taxon1 620.04008 687.7756 67.73547
#> Taxon2 312.62525 414.2285 101.60321
#> Taxon3 312.62525 416.8337 104.20842
#> Taxon4 719.03808 781.5631 62.52505
#> Taxon5 80.76152 119.8397 39.07816
#> Taxon6 247.49499 336.0721 88.57715
#>
#> $`Range = 60%`
#> bio12_tol_inf bio12_tol_sup bio12_range
#> Taxon1 544.4890 781.5631 237.0741
#> Taxon2 224.0481 583.5671 359.5190
#> Taxon3 224.0481 586.1723 362.1242
#> Taxon4 651.3026 864.9299 213.6273
#> Taxon5 49.4990 192.7856 143.2866
#> Taxon6 171.9439 487.1743 315.2305
#>
#> $`Range = 95%`
#> bio12_tol_inf bio12_tol_sup bio12_range
#> Taxon1 429.85972 995.1904 565.3307
#> Taxon2 127.65531 1021.2425 893.5872
#> Taxon3 127.65531 1029.0581 901.4028
#> Taxon4 536.67335 1047.2946 510.6212
#> Taxon5 20.84168 458.5170 437.6754
#> Taxon6 91.18236 919.6393 828.4569
#>